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ARXIV:2605.10429 · MOLECULAR REPRESENTATION LEARNING · SUBMITTED 12 MAY · 20:16 UTC · FRESHNESS FRESH
ARXIV:2605.10429MOLECULAR REPRESENTATION LEARNINGSUBMITTED 12 MAY · 20:16 UTCFRESHNESS FRESHJiebin Fang · Zidi Yan · Churu Mao · Yongjun Jiang · Xinyi Tang · Lei Miao · +4 at arXiv
A framework that aligns topological molecular inputs with NMR observables to improve molecular representation learning by addressing chemical environment collapse.
Opportunity summary
Pain A framework that aligns topological molecular inputs with NMR observables to improve molecular representation learning by addressing chemical environment collapse.
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A framework that aligns topological molecular inputs with NMR observables to improve molecular representation learning by addressing chemical environment collapse. Here we construct complementary high-fidelity experimental and computational 13C NMR resources, which reveal a…
Nuclear magnetic resonance (NMR) spectroscopy provides an experimental readout of local chemical environments, but its use in molecular representation learning has been constrained by heterogeneous data and incomplete atom-level assignments. Here we construct complementary…
ScienceToStartup currently rates this 3.0/10 on the public viability pass. Through hierarchical chemical priors and cross-level contrastive learning, CLAIM restores lost chemical resolution and markedly improves atom-level molecule-spectrum retrieval.
Molecular Representation Learning moved forward this cycle; last verified May 2026. Public score 3.0/10.
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A framework that aligns topological molecular inputs with NMR observables to improve molecular representation learning by addressing chemical environment collapse.
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10.48550/arXiv.2605.10429A framework that aligns topological molecular inputs with NMR observables to improve molecular representation learning by addressing chemical environment collapse.
Abstract
Nuclear magnetic resonance (NMR) spectroscopy provides an experimental readout of local chemical environments, but its use in molecular representation learning has been constrained by heterogeneous data and incomplete atom-level assignments. Here we construct complementary high-fidelity experimental and computational 13C NMR resources, which reveal a recurrent form of representational collapse: atoms that are equivalent in molecular topology can remain experimentally distinct in their real chemical environments, whereas explicit 3D descriptions are further limited by static conformations in dynamic regimes. To alleviate this bottleneck, we develop CLAIM (Contrastive Learning for Atom-to-molecule Inference of Molecular NMR), a framework that aligns efficient topological molecular inputs with atom-resolved NMR observables. Through hierarchical chemical priors and cross-level contrastive learning, CLAIM restores lost chemical resolution and markedly improves atom-level molecule-spectrum retrieval. CLAIM remains robust in flexible and tautomeric systems for 13C NMR prediction, improves stereoisomer discrimination without explicit 3D modelling, and transfers to broader molecular property tasks including ADMET prediction and fluorescence estimation. These results establish physically grounded spectral alignment as an effective strategy for alleviating chemical-environment collapse and for guiding experimentally grounded molecular representation learning.
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PROBLEM
A framework that aligns topological molecular inputs with NMR observables to improve molecular representation learning by addressing chemical environment collapse. Here we construct complementary high-fidelity experimental and computational 13C NMR resources, which reveal a recu...
METHOD
Nuclear magnetic resonance (NMR) spectroscopy provides an experimental readout of local chemical environments, but its use in molecular representation learning has been constrained by heterogeneous data and incomplete atom-level assignments. Here we construct complementary high-...
RESULT
ScienceToStartup currently rates this 3.0/10 on the public viability pass. Through hierarchical chemical priors and cross-level contrastive learning, CLAIM restores lost chemical resolution and markedly improves atom-level molecule-spectrum retrieval.
WHY NOW
Molecular Representation Learning moved forward this cycle; last verified May 2026. Public score 3.0/10.
Abstract-backed public claims while anchored extraction refreshes.
A framework that aligns topological molecular inputs with NMR observables to improve molecular representation learning by addressing chemical environment collapse. Here we construct complementary high-fidelity experimental and computational 13C NMR resources, which reveal a recurrent form of representational collapse: atoms that are equivalent in molecular topology can remain experimentally distinct in their real chemical environments, whereas explicit 3D descriptions are further limited by static conformations in dynamic regimes.
Abstract-backed fallback claim; anchored extraction has not materialized a public claim row yet.
partial
Nuclear magnetic resonance (NMR) spectroscopy provides an experimental readout of local chemical environments, but its use in molecular representation learning has been constrained by heterogeneous data and incomplete atom-level assignments. Here we construct complementary high-fidelity experimental and computational 13C NMR resources, which reveal a recurrent form of representational collapse: atoms that are equivalent in molecular topology can remain experimentally distinct in their real chemical environments, whereas explicit 3D descriptions are further limited by static conformations in dynamic regimes.
Abstract-backed fallback claim; anchored extraction has not materialized a public claim row yet.
partial
ScienceToStartup currently rates this 3.0/10 on the public viability pass. Through hierarchical chemical priors and cross-level contrastive learning, CLAIM restores lost chemical resolution and markedly improves atom-level molecule-spectrum retrieval.
Abstract-backed fallback claim; anchored extraction has not materialized a public claim row yet.
partial
Molecular Representation Learning moved forward this cycle; last verified May 2026. Public score 3.0/10.
Abstract-backed fallback claim; anchored extraction has not materialized a public claim row yet.
partial
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A framework that aligns topological molecular inputs with NMR observables to improve molecular representation learning by addressing chemical environment collapse.
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Molecular Representation Learning
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